API DocumentationΒΆ

morph_tool

Implementation of the morphology file converter.

morph_tool.apical_point

Module to retrieve the position of the apical point.

morph_tool.axon_point

Module to detect the terminal point of the main axon.

morph_tool.converter

A morphology converter that tries to keep the soma surface equal.

morph_tool.exceptions

Exceptions module.

morph_tool.graft

Grafting is the process of taking one piece of a neuron and putting it on another neuron.

morph_tool.loader

Caching morphology loader.

morph_tool.morphdb

Provides two classes to work with neurondb files.

morph_tool.morphio_diff

Functionality that can be used to see if two morphologies are the same or not.

morph_tool.neuron_surface

A utility module to get the surface as computed by neuron.

morph_tool.nrnhines

Utils related to the NRN simulator.

morph_tool.resampling

Resampling functionality for morphio morphologies.

morph_tool.spatial

Module for spatial related functions.

morph_tool.transform

Tools for morphology geometric transformations (translation, rotation, etc).

morph_tool.utils

Utils.

morph_tool.plot

Module for plotting functions.

morph_tool.plot.consts

Constants module.

morph_tool.plot.dendrogram

Module for drawing dendrograms with synapses.

morph_tool.plot.morphology

Module for drawing morphologies with synapses.