morph_tool.spatial

Module for spatial related functions.

Functions

point_to_section_segment(neuron, point[, ...])

Find section and segment that matches the point.
morph_tool.spatial.point_to_section_segment(neuron, point, rtol=1e-05, atol=1e-08)

Find section and segment that matches the point.

Only the first point found with the exact same coordinates as the point argument is considered

Parameters:

  • neuron (morphio.Morphology) – neuron object

  • point (point) – value of the point to find in the h5 file

  • rtol (floats) – precision of np.isclose

  • atol (floats) – precision of np.isclose

Returns:

(NeuroM/MorphIO section ID, point ID) of the point the matches the input coordinates. Since NeuroM v2, section ids of NeuroM and MorphIO are the same excluding soma.

Return type:

Tuple